We study the modeling of nonconvex piecewise-linear functions as mixed-integer programming (MIP) problems. We review several new and existing MIP formulations for continuous piecewise-linear functions ...

Asymmetric interactions between different species of molecules have previously been demonstrated to result in self-organized ...

Generalized linear models are widely used by data analysts. However, the choice of the link function is often made arbitrarily. Here we permit the data to estimate the link function by incorporating ...

In this chapter, we propose a log-linear model for the biases observed when analyzing model communities data. Our model expands the recent work from McLaren, Willis and Callahan (MWC) [eLife, 8:e46923 ...

Deforming them is tricky and the deformations must be integrated into the actual model. That is, without something like a non-linear deformation space, as this paper talks about.